Publications

2026

Tianyuan Liu, Rujing Lei, Ilyas M. Khan & Peter Theobald

Tissue identity is the dominant determinant of cross-species transferability of a porcine developmental programme

BMC Genomics doi 10.1186/s12864-026-13103-0 · Research article · First author

2026

Tianyuan Liu, Alejandro Paniagua, Fabian Jetzinger, Luis Ferrández-Peral, Adam Frankish & Ana Conesa

TUSCO: benchmarking transcriptome reconstruction with endogenous single-isoform controls

Nature Communications 17, 5654 · Research article · First author

2025

Carolina Monzó, Tianyuan Liu & Ana Conesa

Transcriptomics in the era of long-read sequencing

Nature Reviews Genetics 26, 681–701 · Review · Co-first author

2025

Tianyuan Liu & Ana Conesa

Profiling the epigenome using long-read sequencing

Nature Genetics 57, 27–41 · Review · First author

2024

Francisco J. Pardo-Palacios, Dingjie Wang, …, Tianyuan Liu, … Ana Conesa & Angela N. Brooks

Systematic assessment of long-read RNA-seq methods for transcript identification and quantification

Nature Methods 21, 1349–1363 · LRGASP Consortium · Co-author (56 of 87)

2024

Francisco J. Pardo-Palacios, Ángeles Arzalluz-Luque, …, Tianyuan Liu, … & Ana Conesa

SQANTI3: curation of long-read transcriptomes for accurate identification of known and novel isoforms

Nature Methods 21, 793–797 · Methods paper · Co-author (8 of 12)

2023

Jorge Mestre-Tomás, Tianyuan Liu, Francisco J. Pardo-Palacios & Ana Conesa

SQANTI-SIM: a simulator of controlled transcript novelty for lrRNA-seq benchmark

Genome Biology 24, 286 · Methods paper · Co-author (2 of 4)

2022

Tianyuan Liu, Pedro Salguero, Marko Petek, …, & Ana Conesa

PaintOmics 4: new tools for the integrative analysis of multi-omics datasets supported by multiple pathway databases

Nucleic Acids Research 50, W551–W559 · Web server paper · First author

2020

Tianyuan Liu, Leandro Balzano-Nogueira, Ana Lleo & Ana Conesa

Transcriptional differences for COVID-19 disease map genes between males and females indicate a different basal immunophenotype relevant to the disease

Genes 11, 1447 · Research article · First author

2020

Guillem Ylla, Tianyuan Liu & Ana Conesa

MirCure: a tool for quality control, filter and curation of microRNAs of animals and plants

Bioinformatics 36, i618–i624 · ECCB 2020 proceedings · Co-author (2 of 3)